November 12, 2012. S corporations are one of the most popular choices of business entity in San Francisco. As a shareholder-employee of an S corporation, this blog post reminds you of some important rules governing compensation, health and accident insurance, and Schedule K-1 issues. The IRS recently highlighted these key issues on its web site.
As a leading San Francisco CPA firm, Safe Harbor advises on business formation and tax issues. Many San Francisco startups and small businesses choose the S corporation form. We can help advise you on the best business form for your business.
S Corporation – Business Formation and Tax Issues for San Francisco Businesses

The IRS looks at the following factors when determining “reasonable” compensation:
Training and experience;
Duties and responsibilities;
Time and effort devoted to the business;
Dividend history;
Payments to non-shareholder employees;
Timing and manner of paying bonuses to key people; and
What comparable businesses pay for similar services.
If your S corporation also pays health and accident insurance premiums on behalf of greater-than-two percent shareholder-employees, the S corporation may deduct the cost of health and accident insurance premiums paid on their behalf. A “greater-than-two-percent” shareholder employee for this purpose is a person who owns, or is considered as owning under constructive ownership rules, more than two-percent of the outstanding stock of the S corporation or stock possessing more than two percent of the total combined voting power of all the corporation’s stock. The S corporation reports the premium amounts as wages for income tax withholding purposes on the shareholder-employee’s Form W-2. However, these amounts are not subject to Social Security, Medicare or FUTA.
Finally, the IRS reminds S corporation shareholder-employees that the Schedule K-1 issued by the S corporation does not state the taxable amount of their distribution. The Schedule K-1 reflects the S corporation’s income, loss and deductions, which are allocated to the shareholder for the year.
S Corporations and San Francisco Business Formation
If you have questions about the tax obligations of being an S corporation shareholder-employee, or any — and other — issues discussed in this letter, please contact Safe Harbor CPAs by email or call 415.742.4249. We work hard for every type of San Francisco Business, including S Corp’s, to minimize tax implications. If you are a startup, we can advise you on the best way to form your business. Informed choices are what we are all about.

